WAFA started as a Dutch football academy in Ghana before becoming one of the country's leading youth development clubs. Feyenoord Rotterdam established the project in 1998 at Gomoa Fetteh, where young players combined football with formal education. The academy later produced several professionals who continued their careers in Ghana and Europe.
In 2005, Mohammed Abubakari became the first academy graduate to secure a professional contract with Feyenoord Rotterdam. The original team also competed in Ghana's Premier League before returning to the lower divisions. In 2014, the academy adopted the West African Football Academy name and moved to Sogakope in the Volta Region. Its new facilities had previously belonged to Red Bull Ghana, which helped establish the academy's modern home.
WAFA enjoyed its best Premier League campaign in 2016/17, when the team finished second in the championship. A famous victory over Hearts of Oak became one of the most memorable results of that season. The club developed a reputation for strong home performances, particularly against older and more experienced Ghanaian teams.
Relegation from the Premier League followed in 2022, but the next challenge involved more than football results. League registration rules required WAFA to host matches at Gomoa Fetteh, far from its Sogakope academy. The club therefore acquired a regional Division Two licence, which meant another drop but allowed home matches in Sogakope.
WAFA returned to Division One in June 2025 after defeating Kpetoe Diamond in the regional promotion final. Sudais Yakubu scored the decisive goal after Hallo Issa had opened the scoring earlier in the contest. The team had already won all 18 preliminary matches, an impressive record for its young squad.
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